Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003455.1 Corchorus olitorius cultivar O-4 contig03463, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 924

Length: 1540
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36


Found at i:751 original size:20 final size:20

Alignment explanation


    Indices: 726--825  Score: 200
    Period size: 20  Copynumber: 5.0  Consensus size: 20

        716 TGGCTATAAG

                                
        726 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        746 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        766 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        786 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

                                
        806 TCAACTCTTGTCTATCTTTT
          1 TCAACTCTTGTCTATCTTTT

        826 GAGGAATAAT


Statistics
Matches: 80,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   80  1.00

ACGTcount: A:0.15, C:0.25, G:0.05, T:0.55


Consensus pattern (20 bp):   
TCAACTCTTGTCTATCTTTT

Done.