Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003466.1 Corchorus olitorius cultivar O-4 contig03474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:447 original size:21 final size:21

Alignment explanation


    Indices: 423--556  Score: 200
    Period size: 21  Copynumber: 6.4  Consensus size: 21

        413 CTTAGGCAAT

                         *       
        423 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        444 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        465 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                               * 
        486 TCCAATGAGCTTGGAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        507 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        528 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        549 TCCAATGA
          1 TCCAATGA

        557 ACTTCTACCA


Statistics
Matches: 106,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    2  0.02
  21  104  0.98

ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.