Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003475.1 Corchorus olitorius cultivar O-4 contig03483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2082
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.40


Found at i:277 original size:11 final size:11

Alignment explanation


    Indices: 261--295  Score: 70
    Period size: 11  Copynumber: 3.2  Consensus size: 11

        251 CTTTCTTCAA

                       
        261 TATTATTTTGT
          1 TATTATTTTGT

                       
        272 TATTATTTTGT
          1 TATTATTTTGT

                       
        283 TATTATTTTGT
          1 TATTATTTTGT

              
        294 TA
          1 TA

        296 ATAGTATAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   24  1.00

ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71


Consensus pattern (11 bp):   
TATTATTTTGT
Done.