Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000035.1 Corchorus olitorius cultivar O-4 contig00035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 713

Length: 1189
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40


Found at i:647 original size:13 final size:13

Alignment explanation


    Indices: 629--658  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

        619 ATAATTGAAT

                         
        629 TTTTCTAACATTA
          1 TTTTCTAACATTA

                     *   
        642 TTTTCTAACTTTA
          1 TTTTCTAACATTA

                
        655 TTTT
          1 TTTT

        659 TATTACCGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.23, C:0.13, G:0.00, T:0.63


Consensus pattern (13 bp):   
TTTTCTAACATTA

Done.