Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000351.1 Corchorus olitorius cultivar O-4 contig00351, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2363
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27


Found at i:618 original size:22 final size:21

Alignment explanation


    Indices: 593--635  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        583 CCAAGTCATT

                     *            
        593 ACCGCCCATTCACCGTGCCATC
          1 ACCGCCCATGC-CCGTGCCATC

                *                
        615 ACCGGCCATGCCCGTGCCATC
          1 ACCGCCCATGCCCGTGCCATC

        636 GCCATTCCAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.16, C:0.49, G:0.19, T:0.16


Consensus pattern (21 bp):   
ACCGCCCATGCCCGTGCCATC

Found at i:1479 original size:17 final size:17

Alignment explanation


    Indices: 1459--1501  Score: 52
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       1449 TAACAAAGTT

                              
       1459 CATTTCCTTTT-AAAGCC
          1 CATTTCCTTTTGAAA-CC

                 *           
       1476 CATTTTCTTTTGAAACC
          1 CATTTCCTTTTGAAACC

               *     
       1493 CATCTCCTT
          1 CATTTCCTT

       1502 CCTTTATTGT


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  17   19  0.86
  18    3  0.14

ACGTcount: A:0.21, C:0.30, G:0.05, T:0.44


Consensus pattern (17 bp):   
CATTTCCTTTTGAAACC
Done.