Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003524.1 Corchorus olitorius cultivar O-4 contig03532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36


Found at i:1017 original size:14 final size:14

Alignment explanation


    Indices: 998--1025  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        988 CTTTGTCCAC

                          
        998 TGAACCTAATTTTT
          1 TGAACCTAATTTTT

                          
       1012 TGAACCTAATTTTT
          1 TGAACCTAATTTTT

       1026 AGAAAAAAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50


Consensus pattern (14 bp):   
TGAACCTAATTTTT
Done.