Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000354.1 Corchorus olitorius cultivar O-4 contig00354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1065
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43


Found at i:736 original size:40 final size:40

Alignment explanation


    Indices: 682--766  Score: 109
    Period size: 40  Copynumber: 2.1  Consensus size: 40

        672 AGTGTTTGGT

                                                     
        682 TATTTGATCAGTGTTAATGATTAATTT-TTGATCAAACACC
          1 TATTTGATCAGTGTTAATGATT-ATTTATTGATCAAACACC

                    **      * *                    *
        722 TATTTGATTGGTGTTAGTTATTATTTATTGATCAAACACT
          1 TATTTGATCAGTGTTAATGATTATTTATTGATCAAACACC

                 
        762 TATTT
          1 TATTT

        767 TAATTCTACA


Statistics
Matches: 39,  Mismatches: 5, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  39    4  0.10
  40   35  0.90

ACGTcount: A:0.29, C:0.09, G:0.13, T:0.48


Consensus pattern (40 bp):   
TATTTGATCAGTGTTAATGATTATTTATTGATCAAACACC
Done.