Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003549.1 Corchorus olitorius cultivar O-4 contig03557, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Found at i:806 original size:17 final size:17

Alignment explanation


    Indices: 784--818  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        774 CCATTCCTTA

                  *          
        784 CAATTTGTTCATTGAGG
          1 CAATTTATTCATTGAGG

                     *       
        801 CAATTTATTTATTGAGG
          1 CAATTTATTCATTGAGG

             
        818 C
          1 C

        819 TGGATGTAAC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43


Consensus pattern (17 bp):   
CAATTTATTCATTGAGG
Done.