Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003554.1 Corchorus olitorius cultivar O-4 contig03562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26


Found at i:893 original size:29 final size:29

Alignment explanation


    Indices: 860--915  Score: 112
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        850 AGGCAAAGGG

                                         
        860 GCGTAAGAGGTGAGACTAGAAGGAGAGGA
          1 GCGTAAGAGGTGAGACTAGAAGGAGAGGA

                                       
        889 GCGTAAGAGGTGAGACTAGAAGGAGAG
          1 GCGTAAGAGGTGAGACTAGAAGGAGAG

        916 AACTAAATAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.38, C:0.07, G:0.45, T:0.11


Consensus pattern (29 bp):   
GCGTAAGAGGTGAGACTAGAAGGAGAGGA
Done.