Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003590.1 Corchorus olitorius cultivar O-4 contig03598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2308
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19


Found at i:215 original size:21 final size:21

Alignment explanation


    Indices: 189--234  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        179 CCAGCGCGCT

                     * *         
        189 GCTGACGCCTGCCAACAGCAC
          1 GCTGACGCCGGACAACAGCAC

                   *      *      
        210 GCTGACGGCGGACATCAGCAC
          1 GCTGACGCCGGACAACAGCAC

                
        231 GCTG
          1 GCTG

        235 CGCGGGAAGA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11


Consensus pattern (21 bp):   
GCTGACGCCGGACAACAGCAC
Done.