Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003605.1 Corchorus olitorius cultivar O-4 contig03613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.15


Found at i:526 original size:21 final size:22

Alignment explanation


    Indices: 478--526  Score: 59
    Period size: 21  Copynumber: 2.3  Consensus size: 22

        468 CACATCGTTC

                                  
        478 CACAGCACCACGGCGATGACCG
          1 CACAGCACCACGGCGATGACCG

              *                    
        500 -AGAGCA-CACCGGCGATG-CCG
          1 CACAGCACCA-CGGCGATGACCG

                   
        520 CACAGCA
          1 CACAGCA

        527 AGCGCCCGCG


Statistics
Matches: 23,  Mismatches: 2, Indels: 5
        0.77            0.07        0.17

Matches are distributed among these distances:
  20    5  0.22
  21   18  0.78

ACGTcount: A:0.29, C:0.39, G:0.29, T:0.04


Consensus pattern (22 bp):   
CACAGCACCACGGCGATGACCG
Done.