Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003637.1 Corchorus olitorius cultivar O-4 contig03645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1346
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1339 original size:19 final size:19

Alignment explanation


    Indices: 1288--1339  Score: 63
    Period size: 19  Copynumber: 2.8  Consensus size: 19

       1278 CACATGTGGG

                               
       1288 ATTAATAA-TAATTATTCA
          1 ATTAATAATTAATTATTCA

               *              * 
       1306 ATAAAATAATT-ATTATTTA
          1 AT-TAATAATTAATTATTCA

                           
       1325 ATTAATAATTAATTA
          1 ATTAATAATTAATTA

       1340 ATTTCAG


Statistics
Matches: 28,  Mismatches: 3, Indels: 5
        0.78            0.08        0.14

Matches are distributed among these distances:
  18    9  0.32
  19   18  0.64
  20    1  0.04

ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46


Consensus pattern (19 bp):   
ATTAATAATTAATTATTCA
Done.