Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003654.1 Corchorus olitorius cultivar O-4 contig03662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1435
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32


Found at i:1321 original size:9 final size:9

Alignment explanation


    Indices: 1304--1433  Score: 251
    Period size: 9  Copynumber: 14.4  Consensus size: 9

       1294 GCAGGGTTAT

                     
       1304 TTGGTGTTG
          1 TTGGTGTTG

              *      
       1313 TTAGTGTTG
          1 TTGGTGTTG

                     
       1322 TTGGTGTTG
          1 TTGGTGTTG

                     
       1331 TTGGTGTTG
          1 TTGGTGTTG

                     
       1340 TTGGTGTTG
          1 TTGGTGTTG

                     
       1349 TTGGTGTTG
          1 TTGGTGTTG

                     
       1358 TTGGTGTTG
          1 TTGGTGTTG

                     
       1367 TTGGTGTTG
          1 TTGGTGTTG

                     
       1376 TTGGTGTTG
          1 TTGGTGTTG

                     
       1385 TTGGTGTTG
          1 TTGGTGTTG

                     
       1394 TTGGTGTTG
          1 TTGGTGTTG

                     
       1403 TTGGTGTTG
          1 TTGGTGTTG

                     
       1412 TTGGTGTTG
          1 TTGGTGTTG

                     
       1421 TTGGTGTTG
          1 TTGGTGTTG

                
       1430 TTGG
          1 TTGG

       1434 AG


Statistics
Matches: 119,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   9  119  1.00

ACGTcount: A:0.01, C:0.00, G:0.44, T:0.55


Consensus pattern (9 bp):   
TTGGTGTTG

Done.