Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003660.1 Corchorus olitorius cultivar O-4 contig03668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1485
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.23


Found at i:507 original size:12 final size:12

Alignment explanation


    Indices: 492--516  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        482 GCTGATGACC

                        
        492 GTGCTGGCGCTG
          1 GTGCTGGCGCTG

                        
        504 GTGCTGGCGCTG
          1 GTGCTGGCGCTG

             
        516 G
          1 G

        517 CGATTGAGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.24, G:0.52, T:0.24


Consensus pattern (12 bp):   
GTGCTGGCGCTG
Done.