Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003666.1 Corchorus olitorius cultivar O-4 contig03674, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31


Found at i:766 original size:6 final size:6

Alignment explanation


    Indices: 755--780  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        745 ACCTGTTTAC

                                          
        755 ACCTAT ACCTAT ACCTAT ACCTAT AC
          1 ACCTAT ACCTAT ACCTAT ACCTAT AC

        781 TGATACTTAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31


Consensus pattern (6 bp):   
ACCTAT

Done.