Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000367.1 Corchorus olitorius cultivar O-4 contig00367, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:472 original size:6 final size:6

Alignment explanation


    Indices: 461--488  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        451 ATAGTACCAG

                                            
        461 GAAAAT GAAAAT GAAAAT GAAAAT GAAA
          1 GAAAAT GAAAAT GAAAAT GAAAAT GAAA

        489 GGCGCTGTCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.18, T:0.14


Consensus pattern (6 bp):   
GAAAAT

Found at i:691 original size:55 final size:55

Alignment explanation


    Indices: 607--718  Score: 188
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        597 TCAGTAGGAA

                                          *                     *  
        607 ACCCACCATCCCCTTGCTGCGTTTGGTAGAGCCGTGCGGTAGCGGTGTGATTGAC
          1 ACCCACCATCCCCTTGCTGCGTTTGGTAGAACCGTGCGGTAGCGGTGTGATTAAC

                   *  *                                            
        662 ACCCACCGTCTCCTTGCTGCGTTTGGTAGAACCGTGCGGTAGCGGTGTGATTAAC
          1 ACCCACCATCCCCTTGCTGCGTTTGGTAGAACCGTGCGGTAGCGGTGTGATTAAC

              
        717 AC
          1 AC

        719 TGTTTAGCAA


Statistics
Matches: 53,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  55   53  1.00

ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26


Consensus pattern (55 bp):   
ACCCACCATCCCCTTGCTGCGTTTGGTAGAACCGTGCGGTAGCGGTGTGATTAAC
Done.