Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000037.1 Corchorus olitorius cultivar O-4 contig00037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2857
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:1440 original size:16 final size:15

Alignment explanation


    Indices: 1380--1440  Score: 50
    Period size: 16  Copynumber: 3.9  Consensus size: 15

       1370 CCGAATCCGA

                           
       1380 ACCCAAATTAACCTG
          1 ACCCAAATTAACCTG

               * *          
       1395 ACCTAGATTCAACCTG
          1 ACCCAAATT-AACCTG

              *  **         
       1411 AATCCGGATTAACCTG
          1 -ACCCAAATTAACCTG

                          
       1427 ACCCAAATTCAACC
          1 ACCCAAATT-AACC

       1441 CAACCTGACT


Statistics
Matches: 35,  Mismatches: 8, Indels: 5
        0.73            0.17        0.10

Matches are distributed among these distances:
  15   13  0.37
  16   16  0.46
  17    6  0.17

ACGTcount: A:0.36, C:0.33, G:0.10, T:0.21


Consensus pattern (15 bp):   
ACCCAAATTAACCTG
Done.