Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003707.1 Corchorus olitorius cultivar O-4 contig03717, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31


Found at i:1003 original size:19 final size:19

Alignment explanation


    Indices: 979--1016  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        969 CTAACTCTTT

                         *     
        979 AGTATCTGTTCTTGTTTGA
          1 AGTATCTGTTCTTATTTGA

                               
        998 AGTATCTGTTCTTATTTGA
          1 AGTATCTGTTCTTATTTGA

       1017 TACATTGTAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.18, C:0.11, G:0.18, T:0.53


Consensus pattern (19 bp):   
AGTATCTGTTCTTATTTGA
Done.