Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003728.1 Corchorus olitorius cultivar O-4 contig03738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1020 original size:69 final size:69

Alignment explanation


    Indices: 907--1049  Score: 191
    Period size: 69  Copynumber: 2.1  Consensus size: 69

        897 GAAGATCAAC

                *                                *                * *        
        907 TCATAAAAACTTCTTGAAATGCGATCAACTCTGATCATCAAAAACTTCTTAAAATGTGATC-ACT
          1 TCATCAAAACTTCTTGAAATGCGATCAACTCTGATCACCAAAAACTTCTTAAAACGAGATCAACT

                
        971 CTGA
         66 CTGA

                                 *                   *          *            
        975 TCATCAAAACTTCTTGAAA-GGGAGNTCAACTCTGATCACCGAAAACTTCTTGAAACGAGATCAA
          1 TCATCAAAACTTCTTGAAATGCGA--TCAACTCTGATCACCAAAAACTTCTTAAAACGAGATCAA

                  
       1039 CTCTGA
         64 CTCTGA

                 
       1045 TCATC
          1 TCATC

       1050 GAAAGC


Statistics
Matches: 65,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  67    3  0.05
  68   18  0.28
  69   32  0.49
  70   12  0.18

ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28


Consensus pattern (69 bp):   
TCATCAAAACTTCTTGAAATGCGATCAACTCTGATCACCAAAAACTTCTTAAAACGAGATCAACT
CTGA

Found at i:1053 original size:35 final size:35

Alignment explanation


    Indices: 912--1053  Score: 189
    Period size: 35  Copynumber: 4.1  Consensus size: 35

        902 TCAACTCATA

                            *                 *
        912 AAAACTTCTTGAAATGCGATCAACTCTGATCATCA
          1 AAAACTTCTTGAAATGAGATCAACTCTGATCATCG

                      *     *                  
        947 AAAACTTCTTAAAATGTGATC-ACTCTGATCATC-
          1 AAAACTTCTTGAAATGAGATCAACTCTGATCATCG

                           *   *             *  
        980 AAAACTTCTTGAAAGGGAGNTCAACTCTGATCACCG
          1 AAAACTTCTTGAAA-TGAGATCAACTCTGATCATCG

                          *                    
       1016 AAAACTTCTTGAAACGAGATCAACTCTGATCATCG
          1 AAAACTTCTTGAAATGAGATCAACTCTGATCATCG

               
       1051 AAA
          1 AAA

       1054 GC


Statistics
Matches: 94,  Mismatches: 10, Indels: 6
        0.85            0.09        0.05

Matches are distributed among these distances:
  33   13  0.14
  34   16  0.17
  35   51  0.54
  36   14  0.15

ACGTcount: A:0.37, C:0.22, G:0.13, T:0.27


Consensus pattern (35 bp):   
AAAACTTCTTGAAATGAGATCAACTCTGATCATCG
Done.