Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000373.1 Corchorus olitorius cultivar O-4 contig00373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27


Found at i:56 original size:21 final size:21

Alignment explanation


    Indices: 30--71  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         20 CCACCACTTG

                     **          
         30 TAACAGCTCCTGTATAAGTTT
          1 TAACAGCTCAAGTATAAGTTT

                                 
         51 TAACAGCTCAAGTATAAGTTT
          1 TAACAGCTCAAGTATAAGTTT

         72 GTCAATACCG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36


Consensus pattern (21 bp):   
TAACAGCTCAAGTATAAGTTT

Found at i:449 original size:55 final size:55

Alignment explanation


    Indices: 365--476  Score: 215
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        355 GAAACATCAA

                                                                   
        365 CCTTTCGTCAGCCAAAATTGATGATGACCAACCGAACCTGCTTACCTAAAGTTGT
          1 CCTTTCGTCAGCCAAAATTGATGATGACCAACCGAACCTGCTTACCTAAAGTTGT

                    *                                              
        420 CCTTTCGTTAGCCAAAATTGATGATGACCAACCGAACCTGCTTACCTAAAGTTGT
          1 CCTTTCGTCAGCCAAAATTGATGATGACCAACCGAACCTGCTTACCTAAAGTTGT

              
        475 CC
          1 CC

        477 CAATAAGATC


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28


Consensus pattern (55 bp):   
CCTTTCGTCAGCCAAAATTGATGATGACCAACCGAACCTGCTTACCTAAAGTTGT
Done.