Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003739.1 Corchorus olitorius cultivar O-4 contig03749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1416
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Found at i:1374 original size:27 final size:27

Alignment explanation


    Indices: 1336--1389  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1326 AAAATACTAT

                                       
       1336 GCCAAGTAAGTATAGGAGTCAGTAGGC
          1 GCCAAGTAAGTATAGGAGTCAGTAGGC

                                       
       1363 GCCAAGTAAGTATAGGAGTCAGTAGGC
          1 GCCAAGTAAGTATAGGAGTCAGTAGGC

       1390 TTGCGAGCAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.33, C:0.15, G:0.33, T:0.19


Consensus pattern (27 bp):   
GCCAAGTAAGTATAGGAGTCAGTAGGC
Done.