Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003750.1 Corchorus olitorius cultivar O-4 contig03760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1799
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31


Found at i:532 original size:12 final size:12

Alignment explanation


    Indices: 515--541  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        505 ATTTGAATTT

                        
        515 TTTGGGTACAAC
          1 TTTGGGTACAAC

                        
        527 TTTGGGTACAAC
          1 TTTGGGTACAAC

               
        539 TTT
          1 TTT

        542 AAATTTTAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41


Consensus pattern (12 bp):   
TTTGGGTACAAC
Done.