Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003756.1 Corchorus olitorius cultivar O-4 contig03766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1672
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29


Found at i:612 original size:15 final size:15

Alignment explanation


    Indices: 592--622  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        582 CCATATTGCA

                       *   
        592 TGTTACCTGTAGTTC
          1 TGTTACCTGTAATTC

                           
        607 TGTTACCTGTAATTC
          1 TGTTACCTGTAATTC

             
        622 T
          1 T

        623 TACTTTAACA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48


Consensus pattern (15 bp):   
TGTTACCTGTAATTC
Done.