Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003759.1 Corchorus olitorius cultivar O-4 contig03769, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:463 original size:13 final size:13

Alignment explanation


    Indices: 445--470  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        435 AATATTCTAC

                         
        445 TAAAAAAATAAAA
          1 TAAAAAAATAAAA

                         
        458 TAAAAAAATAAAA
          1 TAAAAAAATAAAA

        471 GTGGGTAAAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (13 bp):   
TAAAAAAATAAAA
Done.