Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000376.1 Corchorus olitorius cultivar O-4 contig00376, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1333
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32


Found at i:960 original size:31 final size:31

Alignment explanation


    Indices: 902--1019  Score: 227
    Period size: 31  Copynumber: 3.8  Consensus size: 31

        892 ACCAAAGTCG

                                            
        902 AGAAAAATCAACACGGTGCTTTTTTTTTTGGC
          1 AGAAAAATCAACACGGTGC-TTTTTTTTTGGC

                                           
        934 AGAAAAATCAACACGGTGCTTTTTTTTTGGC
          1 AGAAAAATCAACACGGTGCTTTTTTTTTGGC

                                           
        965 AGAAAAATCAACACGGTGCTTTTTTTTTGGC
          1 AGAAAAATCAACACGGTGCTTTTTTTTTGGC

                                    
        996 AGAAAAATCAACACGGTGCTTTTT
          1 AGAAAAATCAACACGGTGCTTTTT

       1020 AGTAAGAAAC


Statistics
Matches: 86,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  31   67  0.78
  32   19  0.22

ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35


Consensus pattern (31 bp):   
AGAAAAATCAACACGGTGCTTTTTTTTTGGC

Done.