Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003781.1 Corchorus olitorius cultivar O-4 contig03791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1501
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33


Found at i:584 original size:21 final size:21

Alignment explanation


    Indices: 560--623  Score: 128
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        550 GGAACCATGG

                                 
        560 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
        581 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
        602 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

             
        623 C
          1 C

        624 CGTTTTGAGA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   43  1.00

ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42


Consensus pattern (21 bp):   
CATATATGTTTGGAATAGATT
Done.