Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000384.1 Corchorus olitorius cultivar O-4 contig00384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31


Found at i:551 original size:45 final size:45

Alignment explanation


    Indices: 500--645  Score: 265
    Period size: 45  Copynumber: 3.2  Consensus size: 45

        490 CGTAAGCAAA

                                                         
        500 AGGCTTCGGGGTATTAGCTATCATGTGTTGCGGCAGCACTGTGGG
          1 AGGCTTCGGGGTATTAGCTATCATGTGTTGCGGCAGCACTGTGGG

                                    *                    
        545 AGGCTTCGGGGTATTAGCTATCATTTGTTGCGGCAGCACTGTGGG
          1 AGGCTTCGGGGTATTAGCTATCATGTGTTGCGGCAGCACTGTGGG

                                               *      *  
        590 AGGCTTCGGGGTATTAGCTATCATGTGTTGCGGCAACACTGTCGG
          1 AGGCTTCGGGGTATTAGCTATCATGTGTTGCGGCAGCACTGTGGG

                       
        635 AGGCTTCGGGG
          1 AGGCTTCGGGG

        646 CTGCTGGCAC


Statistics
Matches: 97,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  45   97  1.00

ACGTcount: A:0.16, C:0.18, G:0.37, T:0.29


Consensus pattern (45 bp):   
AGGCTTCGGGGTATTAGCTATCATGTGTTGCGGCAGCACTGTGGG
Done.