Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003844.1 Corchorus olitorius cultivar O-4 contig03854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1032
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36


Found at i:135 original size:20 final size:20

Alignment explanation


    Indices: 89--136  Score: 53
    Period size: 20  Copynumber: 2.4  Consensus size: 20

         79 CCTCCATTTT

                               *
         89 ATTAAAAATAAAATCTTTAT
          1 ATTAAAAATAAAATCTTTAA

              *      *           
        109 ATAAAAAATTAAAT-TTATAA
          1 ATTAAAAATAAAATCTT-TAA

                    
        129 ATTAAAAA
          1 ATTAAAAA

        137 ATTTTAATAA


Statistics
Matches: 23,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  19    2  0.09
  20   21  0.91

ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35


Consensus pattern (20 bp):   
ATTAAAAATAAAATCTTTAA
Done.