Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003849.1 Corchorus olitorius cultivar O-4 contig03859, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1383
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24


Found at i:413 original size:7 final size:7

Alignment explanation


    Indices: 394--435  Score: 57
    Period size: 7  Copynumber: 6.0  Consensus size: 7

        384 ATTGAAATTT

                *  
        394 TTTAGAA
          1 TTTAAAA

                   
        401 TTTAAAA
          1 TTTAAAA

             *     
        408 TCTAAAA
          1 TTTAAAA

              *    
        415 TTCAAAA
          1 TTTAAAA

                   
        422 TTTAAAA
          1 TTTAAAA

                   
        429 TTTAAAA
          1 TTTAAAA

        436 AAGTGAGCGA


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   7   30  1.00

ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38


Consensus pattern (7 bp):   
TTTAAAA

Done.