Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000389.1 Corchorus olitorius cultivar O-4 contig00389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1581
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1150 original size:26 final size:28

Alignment explanation


    Indices: 1121--1175  Score: 69
    Period size: 30  Copynumber: 2.0  Consensus size: 28

       1111 TCCTTCTACC

                                        
       1121 ATAC-TTTTTC-ACACACCAAACATTAG
          1 ATACATTTTTCAACACACCAAACATTAG

                             *           
       1147 ATACATTTTTTCTAACATACCAAACATTA
          1 ATACA-TTTTTC-AACACACCAAACATTA

       1176 CATTTTTTTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  26    4  0.17
  28    6  0.25
  30   14  0.58

ACGTcount: A:0.40, C:0.24, G:0.02, T:0.35


Consensus pattern (28 bp):   
ATACATTTTTCAACACACCAAACATTAG

Found at i:1437 original size:16 final size:16

Alignment explanation


    Indices: 1416--1463  Score: 87
    Period size: 16  Copynumber: 3.0  Consensus size: 16

       1406 ACATGTTAGC

                      *     
       1416 ATTATCTATCGTCAGT
          1 ATTATCTATCATCAGT

                            
       1432 ATTATCTATCATCAGT
          1 ATTATCTATCATCAGT

                            
       1448 ATTATCTATCATCAGT
          1 ATTATCTATCATCAGT

       1464 CATCAGTCAG


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  16   31  1.00

ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44


Consensus pattern (16 bp):   
ATTATCTATCATCAGT
Done.