Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003905.1 Corchorus olitorius cultivar O-4 contig03915, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1123
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29


Found at i:575 original size:28 final size:28

Alignment explanation


    Indices: 535--590  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        525 TAGGTGATTC

                                        
        535 GAAATAGTGTAATATCCATTCCGTTCTT
          1 GAAATAGTGTAATATCCATTCCGTTCTT

                                        
        563 GAAATAGTGTAATATCCATTCCGTTCTT
          1 GAAATAGTGTAATATCCATTCCGTTCTT

        591 AATGATTGGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39


Consensus pattern (28 bp):   
GAAATAGTGTAATATCCATTCCGTTCTT
Done.