Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003917.1 Corchorus olitorius cultivar O-4 contig03927, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 912

Length: 1521
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:1148 original size:9 final size:9

Alignment explanation


    Indices: 1134--1158  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1124 CGCAGAATGA

                     
       1134 GCGGCGGTG
          1 GCGGCGGTG

                     
       1143 GCGGCGGTG
          1 GCGGCGGTG

                   
       1152 GCGGCGG
          1 GCGGCGG

       1159 CCAAATTTTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.24, G:0.68, T:0.08


Consensus pattern (9 bp):   
GCGGCGGTG
Done.