Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003919.1 Corchorus olitorius cultivar O-4 contig03929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1710
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29


Found at i:827 original size:21 final size:21

Alignment explanation


    Indices: 789--828  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        779 GCTCAAGATT

                       *         
        789 ATCAATCATCATTAATCACTC
          1 ATCAATCATCAATAATCACTC

                     *   *     
        810 ATCAATCATGAATCATCAC
          1 ATCAATCATCAATAATCAC

        829 CTATGAAAAA


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.40, C:0.28, G:0.03, T:0.30


Consensus pattern (21 bp):   
ATCAATCATCAATAATCACTC
Done.