Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003920.1 Corchorus olitorius cultivar O-4 contig03930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1256
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.17


Found at i:1186 original size:15 final size:16

Alignment explanation


    Indices: 1160--1189  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1150 AGGGCTGAGC

                            
       1160 TTCCAGCTCGACGTCG
          1 TTCCAGCTCGACGTCG

                           
       1176 TTCCA-CTCGACGTC
          1 TTCCAGCTCGACGTC

       1190 ATCTCCAACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.13, C:0.40, G:0.20, T:0.27


Consensus pattern (16 bp):   
TTCCAGCTCGACGTCG
Done.