Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003926.1 Corchorus olitorius cultivar O-4 contig03936, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1680
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:762 original size:21 final size:21

Alignment explanation


    Indices: 736--789  Score: 74
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        726 CAGCAGGATA

                                  
        736 AATGAAGAACTG-ACCAAGATT
          1 AATGAAGAACTGAACCAA-ATT

                            *    
        757 AATGAAGAACTGAACCGAATT
          1 AATGAAGAACTGAACCAAATT

                 *      
        778 AATGATGAACTG
          1 AATGAAGAACTG

        790 GACAGTTATT


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  21   26  0.87
  22    4  0.13

ACGTcount: A:0.46, C:0.13, G:0.20, T:0.20


Consensus pattern (21 bp):   
AATGAAGAACTGAACCAAATT
Done.