Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003929.1 Corchorus olitorius cultivar O-4 contig03939, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.12, C:0.36, G:0.37, T:0.15


Found at i:1084 original size:15 final size:16

Alignment explanation


    Indices: 1047--1092  Score: 58
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       1037 GCGCAGCGCA

                   *  *     
       1047 GGCTGGGAGCGCTGGT
          1 GGCTGGGCGCACTGGT

                      *     
       1063 GGCTGGGCGCCCTGGT
          1 GGCTGGGCGCACTGGT

                           
       1079 -GCTGGGCGCACTGG
          1 GGCTGGGCGCACTGG

       1093 CCTGGCTGCT


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  15   13  0.48
  16   14  0.52

ACGTcount: A:0.04, C:0.26, G:0.52, T:0.17


Consensus pattern (16 bp):   
GGCTGGGCGCACTGGT
Done.