Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003939.1 Corchorus olitorius cultivar O-4 contig03949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36


Found at i:838 original size:14 final size:14

Alignment explanation


    Indices: 821--848  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        811 GGATATATAC

                          
        821 CGTATAATTCTTAT
          1 CGTATAATTCTTAT

                          
        835 CGTATAATTCTTAT
          1 CGTATAATTCTTAT

        849 ATATTGTACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50


Consensus pattern (14 bp):   
CGTATAATTCTTAT
Done.