Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003945.1 Corchorus olitorius cultivar O-4 contig03955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2221
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18


Found at i:597 original size:15 final size:15

Alignment explanation


    Indices: 561--591  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        551 GGGCGCGGCC

                           
        561 GGTGCCGCCGCAGCA
          1 GGTGCCGCCGCAGCA

                           
        576 GGTGCCGCCGCAGCA
          1 GGTGCCGCCGCAGCA

             
        591 G
          1 G

        592 CGGCCGGAGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.13, C:0.39, G:0.42, T:0.06


Consensus pattern (15 bp):   
GGTGCCGCCGCAGCA
Done.