Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000398.1 Corchorus olitorius cultivar O-4 contig00398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39


Found at i:48 original size:24 final size:24

Alignment explanation


    Indices: 21--69  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         11 CGTTAATAAC

                     *               
         21 TTCTAAA-ACTTTTTAATTTAATTT
          1 TTCTAAATAATTTTT-ATTTAATTT

                           *        
         45 TTCTAAATAATTTTTTTTTAATTT
          1 TTCTAAATAATTTTTATTTAATTT

             
         69 T
          1 T

         70 ATTAGTTTAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  24   16  0.73
  25    6  0.27

ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63


Consensus pattern (24 bp):   
TTCTAAATAATTTTTATTTAATTT
Done.