Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000004.1 Corchorus olitorius cultivar O-4 contig00004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 605

Length: 1009
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35


Found at i:411 original size:33 final size:32

Alignment explanation


    Indices: 352--416  Score: 87
    Period size: 33  Copynumber: 2.0  Consensus size: 32

        342 TCTTTAAAAA

                              *  *          
        352 TTATTTTCCTTTTCCTTCCTTTTTATTTTTAT
          1 TTATTTTCCTTTTCCTTCATTATTATTTTTAT

                                              
        384 TTATTTTCTCTTTTCCCTT-ATTATTATTTTTAT
          1 TTATTTTC-CTTTT-CCTTCATTATTATTTTTAT

        417 ATATATATAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  32    8  0.28
  33   17  0.59
  34    4  0.14

ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71


Consensus pattern (32 bp):   
TTATTTTCCTTTTCCTTCATTATTATTTTTAT
Done.