Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000040.1 Corchorus olitorius cultivar O-4 contig00040, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2957
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34


Found at i:2831 original size:19 final size:19

Alignment explanation


    Indices: 2766--2831  Score: 51
    Period size: 19  Copynumber: 3.2  Consensus size: 19

       2756 AATTGATTTT

                        *      
       2766 AATTTGATCAAAGTATTCA
          1 AATTTGATCAAAATATTCA

                   **              *
       2785 AATCAATCAATCTAAAAGTATTCT
          1 AAT---TTGATC-AAAA-TATTCA

                               
       2809 AATTTGATCAAAATATTCA
          1 AATTTGATCAAAATATTCA

                
       2828 AATT
          1 AATT

       2832 AATCAATCAA


Statistics
Matches: 35,  Mismatches: 7, Indels: 10
        0.67            0.13        0.19

Matches are distributed among these distances:
  19   12  0.34
  20    4  0.11
  21    4  0.11
  22    4  0.11
  23    3  0.09
  24    8  0.23

ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36


Consensus pattern (19 bp):   
AATTTGATCAAAATATTCA
Done.