Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004020.1 Corchorus olitorius cultivar O-4 contig04031, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 836

Length: 1394
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34


Found at i:1186 original size:16 final size:16

Alignment explanation


    Indices: 1167--1199  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1157 TATTTTTTAA

                             
       1167 TAATATTATTT-TAAGT
          1 TAAT-TTATTTATAAGT

                            
       1183 TAATTTATTTATAAGT
          1 TAATTTATTTATAAGT

             
       1199 T
          1 T

       1200 TTGGCAGTCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58


Consensus pattern (16 bp):   
TAATTTATTTATAAGT
Done.