Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004024.1 Corchorus olitorius cultivar O-4 contig04035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1598
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.17


Found at i:361 original size:23 final size:21

Alignment explanation


    Indices: 328--373  Score: 56
    Period size: 23  Copynumber: 2.1  Consensus size: 21

        318 CCGCCGTGCG

                  *                
        328 GACCGATGTGCTGGTACTGACCC
          1 GACCGAGGTGC-GG-ACTGACCC

                         *       
        351 GACCGAGGTGCGGGCTGACCC
          1 GACCGAGGTGCGGACTGACCC

              
        372 GA
          1 GA

        374 GCGAAGCCCG


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  21    9  0.43
  22    2  0.10
  23   10  0.48

ACGTcount: A:0.17, C:0.30, G:0.37, T:0.15


Consensus pattern (21 bp):   
GACCGAGGTGCGGACTGACCC
Done.