Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004027.1 Corchorus olitorius cultivar O-4 contig04038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1946
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36


Found at i:1025 original size:28 final size:28

Alignment explanation


    Indices: 972--1026  Score: 74
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        962 TAATAACTTC

                                **      
        972 TAAAGCTTTTTAATTTAATTTTTTTAAA
          1 TAAAGCTTTTTAATTTAATTAGTTTAAA

                 *          *          
       1000 TAAAGTTTTTTAATTTTATTAGTTTAA
          1 TAAAGCTTTTTAATTTAATTAGTTTAA

       1027 TCTTTTTATT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  28   23  1.00

ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58


Consensus pattern (28 bp):   
TAAAGCTTTTTAATTTAATTAGTTTAAA
Done.