Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004033.1 Corchorus olitorius cultivar O-4 contig04045, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21


Found at i:85 original size:55 final size:55

Alignment explanation


    Indices: 1--151  Score: 248
    Period size: 55  Copynumber: 2.7  Consensus size: 55

                                                                   
          1 ACAACCGCTGCTGTTTGTCACAGGGTGCGCATTAATGCGCAACTGGCACAATCCC
          1 ACAACCGCTGCTGTTTGTCACAGGGTGCGCATTAATGCGCAACTGGCACAATCCC

                   *                         *             *     * 
         56 ACAACCGTTGCTGTTTGTCACAGGGTGCGCATTGATGCGCAACTGGCTCAATCTC
          1 ACAACCGCTGCTGTTTGTCACAGGGTGCGCATTAATGCGCAACTGGCACAATCCC

                               **                    
        111 ACAACCGCTGCTGTTTGTCGTAGGGTGCGCATTAATGCGCA
          1 ACAACCGCTGCTGTTTGTCACAGGGTGCGCATTAATGCGCA

        152 TCGGGTAACG


Statistics
Matches: 88,  Mismatches: 8, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  55   88  1.00

ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25


Consensus pattern (55 bp):   
ACAACCGCTGCTGTTTGTCACAGGGTGCGCATTAATGCGCAACTGGCACAATCCC
Done.