Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004038.1 Corchorus olitorius cultivar O-4 contig04051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 791

Length: 1319
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:842 original size:27 final size:27

Alignment explanation


    Indices: 812--871  Score: 84
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        802 TGATACTGCT

                          *   **       
        812 GCTGCTGACACTACTGCTGTTGCTCCA
          1 GCTGCTGACACTACAGCTACTGCTCCA

                    *                  
        839 GCTGCTGATACTACAGCTACTGCTCCA
          1 GCTGCTGACACTACAGCTACTGCTCCA

                  
        866 GCTGCT
          1 GCTGCT

        872 CCTGCTCACT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.17, C:0.33, G:0.22, T:0.28


Consensus pattern (27 bp):   
GCTGCTGACACTACAGCTACTGCTCCA
Done.