Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004044.1 Corchorus olitorius cultivar O-4 contig04057, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30


Found at i:162 original size:22 final size:22

Alignment explanation


    Indices: 134--178  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        124 TTGCGAGTAG

                                  
        134 TCCGTCTAGTATGCCTTCTTAC
          1 TCCGTCTAGTATGCCTTCTTAC

                                  
        156 TCCGTCTAGTATGCCTTCTTAC
          1 TCCGTCTAGTATGCCTTCTTAC

             
        178 T
          1 T

        179 TCTTAGTTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.13, C:0.31, G:0.13, T:0.42


Consensus pattern (22 bp):   
TCCGTCTAGTATGCCTTCTTAC

Found at i:824 original size:14 final size:14

Alignment explanation


    Indices: 805--832  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        795 AAGGTACTTG

                          
        805 TTAATAGGCTTAGA
          1 TTAATAGGCTTAGA

                          
        819 TTAATAGGCTTAGA
          1 TTAATAGGCTTAGA

        833 CCCTTGTTAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36


Consensus pattern (14 bp):   
TTAATAGGCTTAGA
Done.