Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004066.1 Corchorus olitorius cultivar O-4 contig04079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1187
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19


Found at i:1087 original size:12 final size:12

Alignment explanation


    Indices: 1070--1100  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       1060 CAGTGACGCG

                        
       1070 TTTGGCGACATT
          1 TTTGGCGACATT

                    *   
       1082 TTTGGCGATATT
          1 TTTGGCGACATT

                   
       1094 TTTGGCG
          1 TTTGGCG

       1101 GGGGGTCGCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.13, C:0.13, G:0.29, T:0.45


Consensus pattern (12 bp):   
TTTGGCGACATT
Done.