Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004071.1 Corchorus olitorius cultivar O-4 contig04084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1418
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:138 original size:22 final size:24

Alignment explanation


    Indices: 113--158  Score: 78
    Period size: 22  Copynumber: 2.0  Consensus size: 24

        103 CTTTTTCATT

                                    
        113 TTTAATATAATC-T-ATATATATA
          1 TTTAATATAATCTTAATATATATA

                                    
        135 TTTAATATAATCTTAATATATATA
          1 TTTAATATAATCTTAATATATATA

        159 AGACATCCTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  22   12  0.55
  23    1  0.05
  24    9  0.41

ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50


Consensus pattern (24 bp):   
TTTAATATAATCTTAATATATATA
Done.