Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004104.1 Corchorus olitorius cultivar O-4 contig04117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.39


Found at i:419 original size:3 final size:3

Alignment explanation


    Indices: 413--570  Score: 291
    Period size: 3  Copynumber: 53.0  Consensus size: 3

        403 TAATAATAAC

                        *       *                                          
        413 TAT TAT TAT CAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

                                                                           
        461 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

                                                                           
        508 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

                               
        556 TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT

        571 ATGAATTAAT


Statistics
Matches: 150,  Mismatches: 4, Indels: 2
        0.96            0.03        0.01

Matches are distributed among these distances:
   2    2  0.01
   3  148  0.99

ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65


Consensus pattern (3 bp):   
TAT

Done.